API Documentation

• pyneuroml package
  • print_v()
  • Subpackages
    • pyneuroml.analysis package
      • analyse_spiketime_vs_dt()
      • generate_current_vs_frequency_curve()
      • pyneuroml.analysis.NML2ChannelAnalysis module
      • pyneuroml.analysis.ChannelDensityPlot module
      • pyneuroml.analysis.ChannelHelper module
    • pyneuroml.channelml package
      • channelml2nml()
    • pyneuroml.lems package
      • generate_lems_file_for_neuroml()
      • get_pop_index()
      • safe_variable()
      • pyneuroml.lems.LEMSSimulation module
    • pyneuroml.plot package
      • pyneuroml.plot.Plot module
      • pyneuroml.plot.PlotSpikes module
      • pyneuroml.plot.PlotMorphology module
    • pyneuroml.povray package
      • pyneuroml.povray.MakeMovie module
      • pyneuroml.povray.NeuroML2ToPOVRay module
      • pyneuroml.povray.OverlaySimulation module
    • pyneuroml.swc package
      • pyneuroml.swc.ExportSWC module
    • pyneuroml.tune package
      • pyneuroml.tune.NeuroMLTuner module
      • pyneuroml.tune.NeuroMLController module
      • pyneuroml.tune.NeuroMLSimulation module
    • pyneuroml.neuron package
      • allca()
      • allcells()
      • allsyns()
      • allv()
      • areainfo()
      • cellinfo()
      • cellinfohoc()
      • export_mod_to_neuroml2()
      • export_to_neuroml1()
      • export_to_neuroml2()
      • get_seg_midpoint()
      • get_utils_hoc()
      • getinfo()
      • load_hoc_or_python_file()
      • morphinfo()
      • morphinfohoc()
      • replace_brackets()
      • rm_NML_str()
      • secinfo()
      • secinfohoc()
      • pyneuroml.neuron.analysis module
    • pyneuroml.utils package
      • extract_position_info()
      • get_colour_hex()
      • get_files_generated_after()
      • get_ion_color()
      • get_pyneuroml_tempdir()
      • get_state_color()
      • rotate_cell()
  • pyneuroml.pynml module
    • cell_info()
    • cells_info()
    • confirm_file_exists()
    • confirm_lems_file()
    • confirm_neuroml_file()
    • convert_to_units()
    • evaluate_arguments()
    • evaluate_component()
    • execute_command_in_dir()
    • execute_command_in_dir_with_realtime_output()
    • extract_annotations()
    • extract_lems_definition_files()
    • generate_lemsgraph()
    • generate_nmlgraph()
    • get_lems_model_with_units()
    • get_path_to_jnml_jar()
    • get_standalone_lems_model()
    • get_value_in_si()
    • gui_string()
    • include_string()
    • list_exposures()
    • list_recording_paths_for_exposures()
    • nml2_to_png()
    • nml2_to_svg()
    • parse_arguments()
    • quick_summary()
    • read_lems_file()
    • read_neuroml2_file()
    • reload_saved_data()
    • reload_standard_dat_file()
    • run_jneuroml()
    • run_jneuroml_with_realtime_output()
    • run_lems_with()
    • run_lems_with_eden()
    • run_lems_with_jneuroml()
    • run_lems_with_jneuroml_brian2()
    • run_lems_with_jneuroml_netpyne()
    • run_lems_with_jneuroml_neuron()
    • split_nml2_quantity()
    • summary()
    • validate_neuroml1()
    • validate_neuroml2()
    • validate_neuroml2_lems_file()
    • version_info()
    • write_lems_file()
    • write_neuroml2_file()